Microbial communities of upland peat swamps were no different 1 year after a hazard reduction burn
By: Christiansen, Nicole A., Kirstie A. Fryirs, Timothy J. Green, and Grant C. Hose. International Journal of Wildland Fire. | Find with Google Scholar »
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Message from the HoD
Dear all,
My thanks to everyone involved in the organisation and delivery of Open Day last Saturday. Despite some technical glitches with the online platform, I am sure the advice and guidance that was provided will have been beneficial to the prospective students, and it was a great pleasure to see so many staff from the Department contributing.
As you will have seen, the Dean has indicated that more details will be coming soon about the implementation of cost saving initiatives introduced by the Vice Chancellor this week. The Department will be working hard to minimise the impact on staff and students, and I urge you to remain positive throughout these uncertain times.
Department Matters is always a great reminder of all the outstanding work going on in research, teaching and outreach in Biology and we should focus on these achievements. Happy reading!
Cheers
Nathan
Save the Date
Next Week
Wed 26th Aug: Department Seminar, 1pm – 2pm (via Zoom – more details below)
Thur 27th Aug: Workshop “Introduction to GIS with R”, 10am – 12pm via Zoom (more info below)
Fri 28th Aug: Wear It Purple Day! (more info below)
Weekly Events
Wed: Department Seminars ARE BACK via Zoom
Wed: Shut Up and Write sessions – now online!
General News and Announcements
Admin Team Updates
Welcome back to Jenny Ghabache (Outreach and Admin Coordinator) and Erin Cheng (Administrative Assistant – Finance) who have both returned from their Secondments and are back in Biology Full Time.
Please direct all Outreach and Social Media related queries to Jenny as Calli Miller will be finishing up with the Department on 25th September.
Emma Wang (Administrative Assistant – HDR) will be working with Biology 2 days per week until Julian May returns Full Time from Secondment at the end of September.
It is with great sadness to let you know that one of our ex-colleagues and Biology family member’s Teresa Potalivo passed away last week.
Teresa was part of the Faculty and Biology family for 11 years from 2004 to 2015 and before that in Purchasing for 22 years from 1981 to 2004.
She retired twice, once from Purchasing and lastly from Biology in 2015.
Those of you who were lucky enough to meet Teresa will remember her kindness, warmth, work dedication, her delicious biscuits and so much more.
A digital card will be created and sent to the family with your messages of condolences. Please submit your message to Calli Miller <calli.miller@mq.edu.au>
Wear it Purple Day – Support our LGBTQI+ Youth
Friday 28th August is Wear it Purple Day. Wear It Purple Day is an annual day of celebration and visibility particularly for young LGBTQ+ Australians. Wear it Purple began 10 years ago in response to global stories of teenagers and young people experiencing exclusion, bullying and harassment, and the impacts of a lack of acceptance of their sexuality, gender identity or sex characteristics.
What to expect on the day?
- Purple cupcakes at all Campus Life outlets – If you missed the rainbow cupcakes during pride month you do not want to miss these
- Paella for Wear it Purple – Paella on Wally’s walk, beside the coffee cart
- The above items will be sold on the day to raise funds for the MQ Queer Collective Student organisation
- Staff and students in purple- everywhere!
In addition to the sale of drool worthy purple cupcakes and Paella, to encourage an army of purple the following Campus Life outlets will be offering a 25% discount for anyone wearing purple on the day.
- Ubar
- Crunch Cafe
- Wally’s Walk Coffee Cart
- Library Cafe
Wear it Purple live event – Pride in Diversity
An online event hosted by Pride in Diversity with a specialist panel to discuss this year’s theme “We are the Change” and the importance of effective change. This event is open to all: Friday 28th August, 9:30am – 11:00am (AEST) – Zoom – Register Here
Zoom backgrounds:
For this week – Goji Berries – Lycium barbarum
Goji Berries have been cultivated in China since at least the third century CE, the time of the Han Dynasty, but in recent years, they have been touted as a superfood in the western world.
OPPORTUNITIES
Please register as a mentor through our Google form. Mentors have the choice of submitting possible projects or to work with students who develop their own project. https://forms.gle/q5wRkHzeCca8gn7p9
Working With Children Check (WWCC). This is not required for registration – we will ask you to update when we’re allocating projects. You can apply or renew at https://www.kidsguardian.nsw.gov.au/child-safe-organisations/working-with-children-check (free for volunteers).
Superstars of STEM & Indigenous Scientists/STEM Network
Yuuma! Calling Aboriginal or Torres Strait Islander people in STEM (science, technology, engineering or maths) who would like to join discussions about forming an Indigenous Scientists/STEM Network.
The initial leadership group on this project is Kamilaroi water scientist Associate Professor Brad Moggridge (University of Canberra), Quandamooka First Nations man Professor Chris Matthews (President of the Aboriginal and Torres Strait Islander Mathematics Alliance and Associate Dean for Indigenous Leadership & Engagement in the Faculty of Science at the University of Technology Sydney), and Kamilaroi scientist Corey Tutt, founder of Deadly Science, University of Sydney).
The aim is to create a space for Indigenous STEM leaders and practitioners – especially Indigenous scientists – to gather virtually to discuss aspirations for this network.
Science & Technology Australia – the peak body for the nation’s STEM workforce – is supporting this initiative by helping to coordinate a first virtual gathering. To get involved, please email ceo@sta.org.au and we’ll connect you in.
And to follow the discussion and Indigenous STEM content: @bradmoggo at @drchris_maths @atsimaAU @corey_tutt @DeadlyScience @ScienceAu.
This year, Hort Innovation is the official Science Award partner, offering a grant of $22,000 (incl. GST) through the Hort Innovation Leadership Fund, to a young Australian with an innovative research idea for the horticultural sector. The horticulture category winner will also be invited to apply for the Minister of Agriculture, Drought and Emergency Management’s Award, granting an additional $22,000 (incl. GST) to extend the project.
Applications are now open and close Friday 2 October at 5:00 pm AEST with winners to be announced at the ABARES Outlook event in March 2021.
For more information visit the website.
1. Go to GrantConnect, log in and search for GO4188 to access the sample application form and link to the application portal.
2. Read through the sample application form to see what’s involved.
3. Check out our handy questions and answers for applicants.
5. Read the Science and Innovation Awards partner profiles to find out what they are looking for.
6. Discover what projects were successful in previous rounds.
7. Prepare, save and submit your application online!
For further information and enquiries:
scienceawards@awe.gov.au, 02 6272 2260 or 02 6272 2303
Applications close 5:00pm AEST Friday 2 October 2020
SEMINARS AND WORKSHOPS
Biological Sciences Seminar
Date/Time: Wednesday, 26th August; 1pm – 2pm.
Speaker: Dr Amy Prendergast
Title: Sub-seasonal palaeoenvironmental records and implications for Upper Palaeolithic modern human occupation in the Levant – what we can learn from mollusc shells
Venue: Zoom link will be sent out via email prior to Seminar.
Workshop “Introduction to GIS with R”
Description: A variety of research fields include the handling of spatial data. While there are many options of software to process geographic information, using a programming language would help you make your work reproducible and easy to customize in the future. In this workshop, we will cover basic concepts of geographic information systems (GIS) and how to analyse and visualize different types of spatial data in R. We are going to track whales and sharks and investigate for seasonality in ocean water temperatures, but the examples provided are not limited to biological sciences and could be applied by any researcher interested in analysing spatial data with R.
Presenter: Yuri Niella is a PhD candidate in the Marine Predator Research Group (Department of Biological Sciences – Macquarie University) interested in how the spatial and trophic ecology or large coastal sharks are being affected by anthropogenic stressors such as climate change, fishing and habitat loss.
Date: Thursday, 27th August; Time: 10 AM – 12 PM
Venue: Zoom meeting – please register for this workshop at https://bit.ly/MQCoders_Zoom. This will ask you to register and then you will receive a confirmation email with information about joining the meeting.
The resources for this workshop are available from https://github.com/mqRusers. If you would like to follow on with the workshop in R, we recommend that you download the resources prior to the workshop start.
Please have R and R Studio downloaded on your laptop before the workshop. You can find instructions for the same here: https://rstudio-education.github.io/hopr/starting.html. If you have any trouble, we’ll be available to help you sort the issues 15 minutes before the workshop begins at the zoom link.
- Ronin Intro – Ronin Brief, brief platform walkthrough, types of problems that can be solved using the platform – single node, multi-node runs, AIML etc..
- Hands on :
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- Brief on Authentication/Authorization, Projects and cost control https://blog.ronin.cloud/login-to-ronin/ , https://blog.ronin.cloud/create-a-project/ , https://blog.ronin.cloud/dashboard-help/ , https://blog.ronin.cloud/smart-schedule-help/
- How to create an S3 object store. – https://blog.ronin.cloud/object-storage/
- How to upload data to and from S3 object store. – https://blog.ronin.cloud/transfer-files-to-machine/, https://blog.ronin.cloud/windows-mac-object-storage/ or https://blog.ronin.cloud/linux-object-storage/
- Provision and start/stop/delete an EC2 instance. – https://blog.ronin.cloud/create-a-machine/
- Move data from Object store to and from EC2 instance. – https://blog.ronin.cloud/linux-object-storage/
- Run some sample application on EC2 instance – https://blog.ronin.cloud/creating-an-rstudio-machine/
- Provision and multi-node cluster. – https://blog.ronin.cloud/create-cluster/
- Run some sample application on the cluster – https://blog.ronin.cloud/ganglia/ , https://blog.ronin.cloud/auto-scale-a-cluster/
Online Statistics Workshops
Insight Research Services Associated is proud to be presenting three workshops online in October/November 2020. 2020.11 Insight Online
* October 24/25: A Gentle Introduction to Statistics in SPSS and R
* October 28/29: Introduction to Linear and Logistic Regression
* November 4/5: Introduction to Longitudinal Data Analysis
These workshops are aimed at non-statisticians as well as statisticians new to these fields. Please read the attached flyer for more information, or visit our website at <https://insightrsa.com/workshops/upcoming>. For questions please contact Mark Griffin at m.griffin@insightrsa.com or by phone on 0448 176 926.
To keep up to date with the training programs being delivered by Insight please consider joining our email list at <https://insightrsa.com/connect-with-us>.
Venture Café – will be convening their community online, via Zoom, and offering the #ThursdayGathering programming in a Virtual format.
For more information visit: https://venturecafesydney.org/whats-on-this-week
HDR NEWS AND OPPORTUNITIES
PhD scholarships available in Biological Sciences
We have several PhD scholarships available in our lab for enthusiastic students.
Can trees using groundwater be detected using DNA? A key question for managing the health of groundwater dependent vegetation is determining if and when plants are using groundwater. Traditionally this has been determined by testing for the presence of groundwater within the plant tissues using water isotope analysis. This project will develop and trial a novel approach; testing for the presence of trees in groundwater using eDNA. Working with MQ and NSW DPIE staff, the project has scope for the successful candidate to shape the research to explore questions of vegetation ecology and the use of eDNA in environmental monitoring.
How does groundwater pumping affect groundwater ecosystems? The over-abstraction of groundwater is a global problem yet its impacts on the ecosystems most affected are poorly known. This project combines laboratory and field studies to look at changes in groundwater level on the biology, ecology and functioning of aquifers. The project is part of a large collaboration with NSW DPIE, UNSW, BOKU University (Vienna) and Western Washington University. There are 3 PhD positions available that will cover aspects of microbial and invertebrate ecology (including eDNA analysis), hydrogeology, geochemistry and modelling.
Scholarship type: Domestic Scholarship (direct entry to PhD, or MRes Yr2 + PhD)
Projects will be supervised by Grant Hose, Kath Korbel, Anthony Chariton and NSW DPIE staff
Contact Grant Hose – <grant.hose@mq.edu.au> for more information.
THIS AND THAT
Macquarie Travel Survey
The University is interested in your commute to campus, the impacts of COVID-19 on your work and travel patterns, and how you plan to use the campus in the future.
Complete the Connect Macquarie Park & North Ryde survey now to share your experience and enter the draw to WIN one of three $100 Macquarie Centre gift vouchers.
The survey is open until 18 August and all responses are anonymous.
Find out more
Contact Head of Design and Sustainability Andrew Cattanach in the Property team for more information: <Andrew.Cattanach@mq.edu.au>
Have You Participated in an Activity for Biology Recently? Don’t forget to fill in the super-quick form here – ACCESS OUTREACH FORM HERE
Department Matters submissions now have their own email address. Please send all your news items for the newsletter to <fse.bionewsletter@mq.edu.au>
Have You Missed Out on an Issue of Department Matters? Back issues can be found at this newsletter archive link for your reading pleasure.
New Publications
Identity by descent analysis identifies founder events and linksSOD1familial and sporadic ALS cases
By: Henden, Lyndal, Natalie A. Twine, Piotr Szul, Emily P. McCann, Garth A. Nicholson, Dominic B. Rowe, Matthew C. Kiernan, Denis C. Bauer, Ian P. Blair, and Kelly L. Williams. npj Genomic Medicine 5, no. 1 (2020): 1-8. | Find with Google Scholar »Ontogenetic habitat shifts reduce costly male-male interactions
By: Khan, Md Kawsar, and Marie E. Herberstein. Evolutionary Ecology (2020): 1-9. | Find with Google Scholar »Two new species of Sabellariidae (Annelida, Polychaeta) from the abyss of eastern Australia
By: ZHANG, JINGHUAI, PAT HUTCHINGS, INGO BURGHARDT, and ELENA KUPRIYANOVA. Zootaxa 4821, no. 3 (2020): 487-510. | Find with Google Scholar »Responses of five naturalised ornamental freshwater plant species to elevated carbon dioxide concentration and nutrient enrichment
By: Gufu, Guyo Duba, Anthony Manea, and Michelle R. Leishman. Hydrobiologia (2020). | Find with Google Scholar »Colonization history affects heating rates of invasive cane toads
By: Kosmala, Georgia K., Gregory P. Brown, and Richard Shine. Scientific Reports 10, no. 1 (2020): 1-7. | Find with Google Scholar »Interacting effects of habitat structure and seeding with oysters on the intertidal biodiversity of seawalls
By: Strain, Elisabeth Marijke Anne, Vivian Ruth Cumbo, Rebecca Louise Morris, Peter David Steinberg, and Melanie Jane Bishop. PloS one 15, no. 7 (2020): e0230807. | Find with Google Scholar »In the Media
Associate Professor Noel Tait was featured in New Zealand Geographic regarding research on the peripatus, a type of velvet worm.
Read more »
Professor Robert Harcourt was featured on 4BC and syndicated stations regarding a Great White shark attack in Port Macquarie.
Read more »
Dr Vanessa Pirotta was interviewed on ABC Radio Canberra Afternoons about whale watching opportunities during the migration season.
Read more »
Associate Professor Michelle Power was featured on ABC Radio Canberra Mornings regarding a citizen science project involving understanding how disease and parasites spread by collecting possum droppings.
Read more »
Professor Rick Shine provided comment to The Guardian about the impact of bushfires on lizards.
Read more »
Distinguished Professor Michael Gillings contributed to a podcast series as part of Science Week ‘Getting to know Prof Michael Gillings: origins of life, art v science and beautiful fungi’
Read more »