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BIOLOGICAL SCIENCES

DEPARTMENT MATTERS | August 21, 2020


Message from the HoD

Dear all,

My thanks to everyone involved in the organisation and delivery of Open Day last Saturday. Despite some technical glitches with the online platform, I am sure the advice and guidance that was provided will have been beneficial to the prospective students, and it was a great pleasure to see so many staff from the Department contributing.

As you will have seen, the Dean has indicated that more details will be coming soon about the implementation of cost saving initiatives introduced by the Vice Chancellor this week. The Department will be working hard to minimise the impact on staff and students, and I urge you to remain positive throughout these uncertain times.

Department Matters is always a great reminder of all the outstanding work going on in research, teaching and outreach in Biology and we should focus on these achievements. Happy reading!

Cheers

Nathan


Save the Date

Next Week

Wed 26th Aug: Department Seminar, 1pm – 2pm (via Zoom – more details below)

Thur 27th Aug: Workshop “Introduction to GIS with R”, 10am – 12pm via Zoom (more info below)

Fri 28th Aug: Wear It Purple Day! (more info below)


Future Events
 
 
15 August – 15 September: Sydney Science Trail (online)
 
Tues 1st Sept: Department Meeting, 1pm – 2pm (via Zoom)

Weekly Events

Wed: Department Seminars ARE BACK via Zoom

Wed: Shut Up and Write sessions – now online! 


General News and Announcements

Admin Team Updates

Welcome back to Jenny Ghabache (Outreach and Admin Coordinator) and Erin Cheng (Administrative Assistant – Finance) who have both returned from their Secondments and are back in Biology Full Time.

Please direct all Outreach and Social Media related queries to Jenny as Calli Miller will be finishing up with the Department on 25th September.

Emma Wang (Administrative Assistant – HDR) will be working with Biology 2 days per week until Julian May returns Full Time from Secondment at the end of September.


It is with great sadness to let you know that one of our ex-colleagues and Biology family member’s Teresa Potalivo passed away last week.

Teresa was part of the Faculty and Biology family for 11 years from 2004 to 2015 and before that in Purchasing for 22 years from 1981 to 2004.

She retired twice, once from Purchasing and lastly from Biology in 2015.

Those of you who were lucky enough to meet Teresa will remember her kindness, warmth, work dedication, her delicious biscuits and so much more.

A digital card will be created and sent to the family with your messages of condolences. Please submit your message to Calli Miller <calli.miller@mq.edu.au>


Wear it Purple Day – Support our LGBTQI+ Youth

Friday 28th August is Wear it Purple Day.  Wear It Purple Day is an annual day of celebration and visibility particularly for young LGBTQ+ Australians.  Wear it Purple began 10 years ago in response to global stories of teenagers and young people experiencing exclusion, bullying and harassment, and the impacts of a lack of acceptance of their sexuality, gender identity or sex characteristics.

What to expect on the day?

  • Purple cupcakes at all Campus Life outlets – If you missed the rainbow cupcakes during pride month you do not want to miss these
  • Paella for Wear it Purple – Paella on Wally’s walk, beside the coffee cart
  • The above items will be sold on the day to raise funds for the MQ Queer Collective Student organisation
  • Staff and students in purple- everywhere!

In addition to the sale of drool worthy purple cupcakes and Paella, to encourage an army of purple the following Campus Life outlets will be offering a 25% discount for anyone wearing purple on the day.

  • Ubar
  • Crunch Cafe
  • Wally’s Walk Coffee Cart
  • Library Cafe

Wear it Purple live event – Pride in Diversity

An online event hosted by Pride in Diversity with a  specialist panel to discuss this year’s theme “We are the Change” and the importance of effective change. This event is open to all: Friday 28th August, 9:30am – 11:00am (AEST) – Zoom – Register Here

Wear It Purple poster

Zoom backgrounds:


 
Plant of the Week 
 

For this week – Goji Berries – Lycium barbarum

Goji Berries have been cultivated in China since at least the third century CE, the time of the Han Dynasty, but in recent years, they have been touted as a superfood in the western world.

Plant of the Week – Goji berries – Lycium barbarum
 

OPPORTUNITIES

Recruiting Mentors for the BioTech Future Challenge
The BIOTech Futures team are academics to mentor high school students under the BIOTech Futures Challenge 2020, a large outreach event hosted by the Australian Research Council (ARC) Training Centre for Innovative BioEngineering (Director: Prof Hala Zreiqat), in conjunction with our many partner institutes and centres.
 
This is a fantastic opportunity for academics, postdocs and research students (all can be mentors) to work together with high school students and inspire the next generation of young scientists. As an academic mentor, you will be guiding one to several teams of high school students on an innovative project in science, engineering, medicine, etc. that is related to your research area. The teams will conduct their research and design for the project, and present their ideas and findings in a short presentation at our end-of-year symposium.
Please find some additional information regarding the event below. For more detailed information about our expectations for mentor commitment, please see the attached “Final Statement of commitment” document. More information can be found on the website https://biotechfutures.org/ or contact biotech.futures@sydney.edu.au.
 

Please register as a mentor through our Google form. Mentors have the choice of submitting possible projects or to work with students who develop their own project. https://forms.gle/q5wRkHzeCca8gn7p9

Working With Children Check (WWCC). This is not required for registration – we will ask you to update when we’re allocating projects. You can apply or renew at https://www.kidsguardian.nsw.gov.au/child-safe-organisations/working-with-children-check (free for volunteers).


Superstars of STEM & Indigenous Scientists/STEM Network

Yuuma! Calling Aboriginal or Torres Strait Islander people in STEM (science, technology, engineering or maths) who would like to join discussions about forming an Indigenous Scientists/STEM Network.

The initial leadership group on this project is Kamilaroi water scientist Associate Professor Brad Moggridge (University of Canberra), Quandamooka First Nations man Professor Chris Matthews (President of the Aboriginal and Torres Strait Islander Mathematics Alliance and Associate Dean for Indigenous Leadership & Engagement in the Faculty of Science at the University of Technology Sydney), and Kamilaroi scientist Corey Tutt, founder of Deadly Science, University of Sydney).

The aim is to create a space for Indigenous STEM leaders and practitioners – especially Indigenous scientists – to gather virtually to discuss aspirations for this network.

Science & Technology Australia – the peak body for the nation’s STEM workforce – is supporting this initiative by helping to coordinate a first virtual gathering. To get involved, please email ceo@sta.org.au and we’ll connect you in.

And to follow the discussion and Indigenous STEM content: @bradmoggo at @drchris_maths @atsimaAU @corey_tutt @DeadlyScience @ScienceAu.


Hort Innovation Leadership Fund Grant for young scientists
Hort Innovation is partnering with the 2021 Science and Innovation Awards for Young People in Agriculture, Fisheries and Forestry, a competitive grant program that seeks to advance the careers of young researches, scientists, producers and innovators aged between 18 and 35 years by funding research projects that benefit Australia’s primary industries. 

This year, Hort Innovation is the official Science Award partner, offering a grant of $22,000 (incl. GST) through the Hort Innovation Leadership Fund, to a young Australian with an innovative research idea for the horticultural sector. The horticulture category winner will also be invited to apply for the Minister of Agriculture, Drought and Emergency Management’s Award, granting an additional $22,000 (incl. GST) to extend the project.  

Applications are now open and close Friday 2 October at 5:00 pm AEST with winners to be announced at the ABARES Outlook event in March 2021.  

For more information visit the website.


2021 Science and Innovation Awards – now open
 
Applications are now open for the 2021 Science and Innovation Awards for Young People in Agriculture, Fisheries and Forestry, a competitive annual grants program supporting young Australians aged 18-35 by funding projects that will benefit Australia’s primary industries. In partnership with research and development corporations and industry associations there are 10 award categories worth up to $22,000 each. 

1. Go to GrantConnectlog in and search for GO4188 to access the sample application form and link to the application portal.
2. Read through the sample application form to see what’s involved.
3. Check out our handy questions and answers for applicants.
5. Read the Science and Innovation Awards partner profiles
 to find out what they are looking for. 
6. Discover what projects were successful in previous rounds.
7. Prepare, save and submit your application online!

For further information and enquiries:
scienceawards@awe.gov.au, 02 6272 2260 or 02 6272 2303

Applications close 5:00pm AEST Friday 2 October 2020


SEMINARS AND WORKSHOPS

Biological Sciences Seminar 

Date/Time: Wednesday, 26th August; 1pm – 2pm. 

Speaker: Dr Amy Prendergast

Title: Sub-seasonal palaeoenvironmental records and implications for Upper Palaeolithic modern human occupation in the Levant – what we can learn from mollusc shells

Venue:  Zoom link will be sent out via email prior to Seminar.


Workshop “Introduction to GIS with R”

DescriptionA variety of research fields include the handling of spatial data. While there are many options of software to process geographic information, using a programming language would help you make your work reproducible and easy to customize in the future. In this workshop, we will cover basic concepts of geographic information systems (GIS) and how to analyse and visualize different types of spatial data in R. We are going to track whales and sharks and investigate for seasonality in ocean water temperatures, but the examples provided are not limited to biological sciences and could be applied by any researcher interested in analysing spatial data with R.

 Presenter: Yuri Niella is a PhD candidate in the Marine Predator Research Group (Department of Biological Sciences – Macquarie University) interested in how the spatial and trophic ecology or large coastal sharks are being affected by anthropogenic stressors such as climate change, fishing and habitat loss.

Date: Thursday, 27th August; Time: 10 AM – 12 PM

Venue: Zoom meeting – please register for this workshop at https://bit.ly/MQCoders_Zoom. This will ask you to register and then you will receive a confirmation email with information about joining the meeting.

The resources for this workshop are available from https://github.com/mqRusers. If you would like to follow on with the workshop in R, we recommend that you download the resources prior to the workshop start. 

Please have R and R Studio downloaded on your laptop before the workshop. You can find instructions for the same here: https://rstudio-education.github.io/hopr/starting.html. If you have any trouble, we’ll be available to help you sort the issues 15 minutes before the workshop begins at the zoom link.


Ronin Workshop for high-performance computing needs
Macquarie University has a partnership with Ronin to facilitate high-performance computing resource via cloud-based providers such as Amazon Web Services (AWS). Although AWS is very expensive, there are various options to optimise the budget and resources. If you and your team use AWS or have a plan on using such resources, it is strongly recommended to attend the Ronin workshop. Please circulate the email among your HDR students. 
 
When: 27th Aug at 1:00-3:00 pm
 
Agenda:
  1. Ronin Intro – Ronin Brief, brief platform walkthrough, types of problems that can be solved using the platform – single node, multi-node runs, AIML etc..
  2. Hands on :
    1. Brief on Authentication/Authorization, Projects and cost control  https://blog.ronin.cloud/login-to-ronin/ ,  https://blog.ronin.cloud/create-a-project/ ,  https://blog.ronin.cloud/dashboard-help/ ,  https://blog.ronin.cloud/smart-schedule-help/    
    2. How to create an S3 object store.  – https://blog.ronin.cloud/object-storage/  
    3. How to upload data to and from S3 object store. –  https://blog.ronin.cloud/transfer-files-to-machine/,  https://blog.ronin.cloud/windows-mac-object-storage/   or  https://blog.ronin.cloud/linux-object-storage/
    4. Provision and start/stop/delete an EC2 instance. –  https://blog.ronin.cloud/create-a-machine/  
    5. Move data from Object store to and from EC2 instance. –  https://blog.ronin.cloud/linux-object-storage/  
    6. Run some sample application on EC2 instance –  https://blog.ronin.cloud/creating-an-rstudio-machine/  
    7. Provision and multi-node cluster. –  https://blog.ronin.cloud/create-cluster/  
    8. Run some sample application on the cluster –  https://blog.ronin.cloud/ganglia/ ,  https://blog.ronin.cloud/auto-scale-a-cluster/

205B PC2 & PC2 Insectary Inductions
 
Inductions have been scheduled for the rest of the year, see dates below. 
 
205B PC2: Tuesdays @ 9:30AM – 25th Aug, 22nd Sep, 20th Oct, 17th Nov, 15th Dec
 
PC2 Insectary: Wednesdays @ 1PM – 26th Aug, 23rd Sep, 21st Oct, 18th Nov, 16th Dec
 
All induction pre-requisites must be completed and provided prior to the induction.
Contact Josh Aldridge <josh.aldridge@mq.edu.au> with enquiries.
 

Online Statistics Workshops

Insight Research Services Associated is proud to be presenting three workshops online in October/November 2020. 2020.11 Insight Online

* October 24/25:  A Gentle Introduction to Statistics in SPSS and R

* October 28/29:  Introduction to Linear and Logistic Regression

* November 4/5:  Introduction to Longitudinal Data Analysis

These workshops are aimed at non-statisticians as well as statisticians new to these fields. Please read the attached flyer for more information, or visit our website at <https://insightrsa.com/workshops/upcoming>. For questions please contact Mark Griffin at m.griffin@insightrsa.com or by phone on 0448 176 926.

To keep up to date with the training programs being delivered by Insight please consider joining our email list at <https://insightrsa.com/connect-with-us>.


Venture Café – will be convening their community online, via Zoom, and offering the #ThursdayGathering programming in a Virtual format.

For more information visit: https://venturecafesydney.org/whats-on-this-week


HDR NEWS AND OPPORTUNITIES

Research Training Certification Program Launch
 
We are pleased to be launching the new program for our HDR students over the next few weeks. This program will enhance the training that we provide to our PhD and 2nd Yr MRes students and will formalise participation in the kind of activities that were formerly provided under Genes to Geoscience and more recently the Research Enrichment Program. In addition, this new scheme will help students to think about career options in and outside academia and improve their skills and CV. 
 
I will be outlining the new program to the students and they will also hear from representatives from the HDR Training and Partnerships Team, and the HDR Professional Skills Team. 
 
There will be a face to face meeting in the tea room for a COVID limited number of students (sign up via the link in the email that was sent out), and a follow-up meeting on Zoom for those who are unable to make the face to face meeting. 
 
Please can you encourage all of your students to attend one of these meetings. 
 
Face to Face – Wednesday 26th August 10am – 12pm. Tea Room in Biological Sciences Building. 
 
via Zoom – Wednesday 2nd September 10am – 12pm. 
 
 
Contact Simon Griffith <simon.griffith@mq.edu.au> (Department Director HDR) for more details. 

PhD scholarships available in Biological Sciences

We have several PhD scholarships available in our lab for enthusiastic students.

Can trees using groundwater be detected using DNA? A key question for managing the health of groundwater dependent vegetation is determining if and when plants are using groundwater. Traditionally this has been determined by testing for the presence of groundwater within the plant tissues using water isotope analysis. This project will develop and trial a novel approach; testing for the presence of trees in groundwater using eDNA. Working with MQ and NSW DPIE staff, the project has scope for the successful candidate to shape the research to explore questions of vegetation ecology and the use of eDNA in environmental monitoring.

How does groundwater pumping affect groundwater ecosystems? The over-abstraction of groundwater is a global problem yet its impacts on the ecosystems most affected are poorly known. This project combines laboratory and field studies to look at changes in groundwater level on the biology, ecology and functioning of aquifers. The project is part of a large collaboration with NSW DPIE, UNSW, BOKU University (Vienna) and Western Washington University. There are 3 PhD positions available that will cover aspects of microbial and invertebrate ecology (including eDNA analysis), hydrogeology, geochemistry and modelling.

Scholarship type: Domestic Scholarship (direct entry to PhD, or MRes Yr2 + PhD)

Projects will be supervised by Grant Hose, Kath Korbel, Anthony Chariton and NSW DPIE staff

Contact Grant Hose – <grant.hose@mq.edu.au> for more information.


THIS AND THAT

Macquarie Travel Survey

The University is interested in your commute to campus, the impacts of COVID-19 on your work and travel patterns, and how you plan to use the campus in the future.

Complete the Connect Macquarie Park & North Ryde survey now to share your experience and enter the draw to WIN one of three $100 Macquarie Centre gift vouchers.

The survey is open until 18 August and all responses are anonymous.

Find out more

Contact Head of Design and Sustainability Andrew Cattanach in the Property team for more information: <Andrew.Cattanach@mq.edu.au>


 Outreach Activities

Have You Participated in an Activity for Biology Recently? Don’t forget to fill in the super-quick form here – ACCESS OUTREACH FORM HERE


Call out for Social Media Content
 
We are looking to feature a different student each week on the Biology Social Media accounts. If you would like to share your research or fieldwork with the public, please send photos and a short blurb about your work to Jenny Ghabache: <jenny.ghabache@mq.edu.au
 
 
 

Correct Method for Submitting to Department Matters

Department Matters submissions now have their own email address. Please send all your news items for the newsletter to <fse.bionewsletter@mq.edu.au>


Have You Missed Out on an Issue of Department Matters? Back issues can be found at this newsletter archive link for your reading pleasure.


New Publications

Microbial communities of upland peat swamps were no different 1 year after a hazard reduction burn

By: Christiansen, Nicole A., Kirstie A. Fryirs, Timothy J. Green, and Grant C. Hose. International Journal of Wildland Fire. | Find with Google Scholar »

Identity by descent analysis identifies founder events and linksSOD1familial and sporadic ALS cases

By: Henden, Lyndal, Natalie A. Twine, Piotr Szul, Emily P. McCann, Garth A. Nicholson, Dominic B. Rowe, Matthew C. Kiernan, Denis C. Bauer, Ian P. Blair, and Kelly L. Williams. npj Genomic Medicine 5, no. 1 (2020): 1-8. | Find with Google Scholar »

Ontogenetic habitat shifts reduce costly male-male interactions

By: Khan, Md Kawsar, and Marie E. Herberstein. Evolutionary Ecology (2020): 1-9. | Find with Google Scholar »

Two new species of Sabellariidae (Annelida, Polychaeta) from the abyss of eastern Australia

By: ZHANG, JINGHUAI, PAT HUTCHINGS, INGO BURGHARDT, and ELENA KUPRIYANOVA. Zootaxa 4821, no. 3 (2020): 487-510. | Find with Google Scholar »

Responses of five naturalised ornamental freshwater plant species to elevated carbon dioxide concentration and nutrient enrichment

By: Gufu, Guyo Duba, Anthony Manea, and Michelle R. Leishman. Hydrobiologia (2020). | Find with Google Scholar »

Colonization history affects heating rates of invasive cane toads

By: Kosmala, Georgia K., Gregory P. Brown, and Richard Shine. Scientific Reports 10, no. 1 (2020): 1-7. | Find with Google Scholar »

Interacting effects of habitat structure and seeding with oysters on the intertidal biodiversity of seawalls

By: Strain, Elisabeth Marijke Anne, Vivian Ruth Cumbo, Rebecca Louise Morris, Peter David Steinberg, and Melanie Jane Bishop. PloS one 15, no. 7 (2020): e0230807. | Find with Google Scholar »

In the Media


Professor Robert Harcourt was featured on 4BC and syndicated stations regarding a Great White shark attack in Port Macquarie.

Read more »


Associate Professor Michelle Power was featured on ABC Radio Canberra Mornings regarding a citizen science project involving understanding how disease and parasites spread by collecting possum droppings.

Read more »


Distinguished Professor Michael Gillings contributed to a podcast series as part of Science Week ‘Getting to know Prof Michael Gillings: origins of life, art v science and beautiful fungi’

Read more »

Recent Completions